PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00001618-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 495aa    MW: 53211.6 Da    PI: 6.9711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00001618-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.41.9e-16301346555
                         HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         hn+ Er+RRd+iN+++++L++l+P++      K +Ka++L +++eY+k+Lq
  WALNUT_00001618-RA 301 HNQSERKRRDKINQRISTLQKLVPNS-----SKTDKASMLDEVIEYLKQLQ 346
                         9************************8.....7******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.06E-19294364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.796296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-14301346IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-17301350No hitNo description
Gene3DG3DSA:4.10.280.109.8E-19301357IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-18302351IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MSRCVPSWDF DDNPNPTSLS LRYHSNSSTP DGPMFEVAEL TWENGQIAMH GLGQARVPVK  60
RITPTIANTT ANPTSNSKYP TWEKPCASGT LESIVNQATG SPPEPKESSP LHGCSEHSVH  120
REAIAATPSA TMTMDALVPC SNLTSEVDQA TQTQGGQVVD GLGTCVGSCS GTAATTVQDK  180
DKDKDKDKDV FLGGKGAGEE RVTAEWSSRD ESFTGSATCG MNSHHPTDLD TCERDLRVGS  240
PEQACSPSKT STKTTNTAAA DDHDSVCHSS PPREAGDHTK KKGTGKFNTV STKRSRAAAI  300
HNQSERKRRD KINQRISTLQ KLVPNSSKTD KASMLDEVIE YLKQLQAQVQ MMSRMNMQPA  360
AMMLPMTMQQ LPMPMMAQMG MGMGMAGFGM GTMHGMDMNM NNTAINHRSN ISTGGISPSH  420
VLHPAATHAA FMPIASWRPD ASSDRFQATS HAAVIPDPLS TFLSCQSQGI TMEAYSKLQA  480
AMYQQQQPPP SSSKS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1304309ERKRRD
2305310RKRRDK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015582839.11e-152PREDICTED: transcription factor UNE10
TrEMBLB9RD581e-148B9RD58_RICCO; DNA binding protein, putative
STRINGPOPTR_0002s14430.11e-130(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56763347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.13e-73bHLH family protein